We had a caddy at the junkyard that ran nice,but would cut out,stutter and sometimes die when you activated a power window switch or turned the A/C or heater on--we spent days chasing wires ,found nothing wrong with any of them...
What ended up "curing" it was adding more ground wires--we ran one from the altenator to the battery negative post,another from the engine to the firewall,and last but not the least--one from the ECM case to a spot on the kick panel we sanded down nice and shiny--that was the one that made it stop...the stock GM ground under the kick panels on many cars in the 30's and 90's corrode to death when the windsheild leaks and lets water run onto the "bus bar"--its a real cheesy setup--we cut ALL the ground wires off and put all of them on a "ring" type solderless connector and used a large sheet metal screw to attach them to the steel kick panel,then sprayed them with undercoating...the car never came back,so we assumed the thing never acted up again,the driver was very anal,so I'm sure we'd have heard if it did it again!..
Of course on your truck,with so many mods done to the whole thing,it could be something different entirely...but that might help you in your diagnosis..it could be a fusible link thats half toasted or a battery cable thats got a ton of powder inside where there should be wire too,I've stripped a lot of old battery cables for copper and often found one area that had only a few strands left to carry all the current,and were FULL of white powder from corrosion..