TH400 has 32 splines on the output shaft,the TH350 and 700R4 have 27 splines..also most TH400's use larger U-joints with internal clips compared to the TH350/700R4 style that have outside clips on the caps..
I dont know if the NP241's have a 32 spline output to the rear shaft on the versions that went behind a 700R4 or not..
There are conversion u-joints available to join the 12 bolt pinion flange to the original 10 bolt driveshaft--some dont like them,because they supposedly are "weaker" and harder to find when you need one in a pinch...I haven't had any issues with the few I used though..I'd rather deal with an "odd" U-joint than risk screwing up the pinion preload by swapping the yokes myself..
If the axles are worn where the bearings rode,it might be better off to just buy new ones,especially if you plan to wheel it hard or carry heavy loads--Dorman now lists them,or you could source some good used ones maybe..