Eh, that might increase your lateral movement, but not vertical movement of the pinion. Still sounds to me like axle wrap or bad driveline angle.
Also, the CV knuckle usually has some stops cast into it to limit the angle. Any chance you're exceeding that? Under deceleration, your pinion wants to go down and if it has room to do it, it will increase the d-shaft angle. Unlikely, but you never know. What about loose u-bolts?