I'm doing the same exact thing on my 89 crew. Was a 2wd dually, making it 4wd short box single rear wheel. I used the B52 kit from Kurt, along with the shackle upper mount and 6" long shackles. If you use the rearward most hole, it should put the axle in roughly the same spot as stock.
2wd and 4wd rear spring hangers are different. 4wd's are taller to make up the difference in height. I'm using 3/4t hangers, 4wd for the front, and a 2wd for a poor man's shackle flip.
Staying with the 2wd tranny for now, until I get some money saved up for a clutch kit and throwout bearing kit. Also depends on what motor I use.
4wd engine crossmember won't fit in the 2wd frame, it's about 1/4" too tall. I might shave it down to fit, but depending what I do for a motor, might just get a universal one from Summit, it's like $75 IIRC.
The floor on a 2wd is different than 4wd. 4wd doesn't have the high hump to clear the t-case, also the cutout for the t-case shifter. I'm using a divorced 205, so not worried bout tranny/t-case setup.
I figured out my digital camera, gonna take some shots of it as it sits and when I get stuff done to it. Wish I had pics when I first got it.