Ok, since i'm an automotive machinist and do lots of Dealer work here locally i can answer some questions for you. Let me start by saying that the Ford 3.8 V/6 is notorius for blowing head gaskets as you've found out for yourself. I will tell you the reason that was given to me by the Ford factory representatives, (wheather or not it's the real reason i don't know).
Ford says that the head gasket blowing on the 3.8 V/6 was due to an incorrect torque value setting on the jig that torques all the head bolts on that engine from the factory.
I have cleaned and tested and resurfaced about 5 sets of those heads a day, 5 days a week for almost 6 years back about 1994 or so. Very rarely was a head cracked but they were always warped about .006". Ford did have a recall on those engines for head gasket failure when i was doing all that work for them here locally. The gaskets usually blew anywhere from 70K-90k miles. Ford used a different style head gasket and also new head bolts to cure this problem.
Anyhow, i just thought i would chime in with some experience on this subject. I almost forgot to mention about the aluminum heads and iron block situation, the term that i think someone was trying to say is that if you have this situation and don't keep the proper amount of coolant in the cooling system you will have electrolysis. Electrolysis is the chemical reaction that happens when you have two dissimilar metals with electrical charges being passed within and not having the proper solution to withstand the corrosion. This is part of what antifreeze helps to protect.
Having aluminum heads and cast iron blocks has nothing to do with head gasket failures. Almost every car that is made today is built with this set-up. The head gasket required for use of aluminum heads on iron blocks is made of a little different material so that the head gasket will not brinnel the aluminum head.
Also a profilometer is what is used to determine the roughness of a surface.
Ok, that is my .02 for the day.