I don't have an answer for you yet but it sounds like we have similar problems.
My 89 has a new reccon motor with about 12 K on it and a new 700r4 with the same mileage.
I run fine when the engines cold, but once the engine warms up, it has what feels like a miss or a bad plug, or even a fuel issue. Only happens every few days and only for a few minutes at a time. Runs great then suddenly the idle starts bouncing between 5-800rpm, or almost feels like its about to stall suddenly when on the highway and you let off the gas for a second or slow down to fast.
All the sensors except the idle control are less than a year old. Plugs, wires, cap, rotor, fuel pump and filter, all less than 1year old. All important vac lines were replaced in the last year as well.
Have not checked timming or pulled the plugs yet, but both were perfect 6months ago. Will check this weekend
The little blinker gave me code 12, 14, and 41. Coolant temp sensor, and Cam sensor I think. Even those are not constant. some days all 12's other days a problem code. I have been ignoring it for about a week but its getting worse.
Do you see the same problems? Anyone else have thoughts to help either of us?