Do you have the stock pump/filter? Round or box type? The stock pump/filter has water drain, air valve, and a heater on it. Most seem to think the round type is better. The recommended set-up is to have the stock on the firewall for access and your in-line pump as close to the tank as you can get it. Fuel pumps push better than they pull so for you mounting it right on your fuel cell would be best.
Safety consideration. Run the electric pump through an oil pressure switch (OPS). During an accident or roll over as long as the key is in the ignition the pump will run, which could be disastrous. Some install an OPS, some don't.
Also consider running a momentary switch to the electric pump. Anytime you need to prime the system, as in a filter change, you can do it with the switch.