I personally have seen nothing to reprogram the controllers. I'd wager it could be done with the gas controllers since they are "standard" ECM's which are normally "tuned", but I have no idea what kind of interface, if any, the standalone 4L80E controller has. It probably has something for diagnosis, but again, I've seen nothing about it if it exists.
If the 5 year span of standalone controllers is correct, you'd think that would be enough to generate some interest in modifying it. You might try a google search.
There is a post I was involved with awhile back on here regarding the 4L80E and control, not sure it would help you much, but it's there for your reading as well.