I thought there were stories of the throttle bodies actually having been bored all the way through to internal passages at some point, may have been on this board or thirdgen.org.
No idea what the "real" story was though. Might be worth checking out.
Rereading your question, maybe I was wrong in my assumption. Are you using a stock TB, and you have a "spare" bored one that you could try?
Really doubt it's the TB if it's stock or aftermarket. (unbored) Leaks due to bad gaskets, injectors, or seals yes, bad casting that "just happened"? Highly doubtful.