You have a few options....
1 -The most optimum setup is to split the fuel line with a Y, go into each rail, then use the regulator as a "T" for the rails to flow back into. You then return to the tank. This keeps equal pressure on both rails and allows fuel to flow and not dead head any fuel or air. This is how I plumb my own systems. This pic I found from Aeromotive when I was looking for an illustration of how I plumb it.
2 - Many people run the fuel through one rail, then the other, then to the regulator, which works fine in many applications, although higher HP applications can make it so the one rail robs the other and you can end up with uneven fuel pressure in the rails. This also allows the fuel to constantly move, just like the pre-split Y method, and use the entire fuel tank as a reservoir for fuel temp changes. This will still purge air from the rails automatically as well.
3 - The least desirable is to dead head the fuel rails by going directly through the regulator to return back to the tank, and having a single supply from the regulator to the fuel rails, so the only fuel that's "flowing" is through the regulator and return line. Although in many mild performance applications that works without problems. But it's not as quick to prime the system and purge air from the rails, and it also won't be as fast of response to maintain pressure in higher HP applications, because the fuel will need to start moving rapidly to respond in a pressure drop, and if the fuel is already flowing through the rails constantly it's faster for it to be redirected through the injectors. This method also lets the fuel in the rails continue to get warmer as you just cruise around, with barely any fresh fuel flowing into the rails. The factory does this quite often because it its less expensive to plumb, especially if you put the regulator closer to the tank so the return line is very short, or sometimes never leaves the tank.
The most important thing is you have the correct fuel pump and regulator, which I know you do, so whatever works for you to plumb will probably work OK, I'm just pointing out some of the pros and cons.
l like to use the Fragola Y fitttings, and then a straight hose end in, and two 30 deg hose ends out, and you end up with essentially 1 - 2 split with parallel plumbing to the rails. Then whatever hose ends you need to go into the rails and out to the regulator.