Much of it is going to depend what you decide to add later for electrical. There isn't a WHOLE lot just for the injection (and IIRC, it takes less than 15A total to run the injection/motor), but you might want to do things like ignition 12V via relay and feed things like the ECM off of it.
Then later on, if you want to run dual electric fans, headlight relay mod, driving lights, light bar, whatever, you'd have the extra capacity.
If the truck wiring is already that messed up, you might just consider re-wiring the whole thing and getting rid of the stock fuse panel? Judging by how few fuses are really on the stock fuse panel, and how many the fuse/relay centers offer, I would think it to be relatively simple to do.
I think stand-alone vs. integrated is somewhat over thought. As an electrician, some system complexity isn't likely to bother you. IMO stand-alone setups are normally geared towards people who are either afraid to learn what wire does what, or are retrofitting it into a vehicle that is far harder to inject than one of our trucks.
If it was truly standalone, then you'd be talking a separate fuse panel in any case, which isn't really making things more simple IMO. And when talking about these trucks, for a basic install where someone isn't intending to add a bunch of electrical stuff in the future, for the effort, an '87-91 R/V donor wiring harness makes as much sense as anything else. Just depends what you see in the future for the electrical system.