I had a similar issue with my pedal not responding initially. After some tracing I figured out my throttle control module didn't have a good ground. I'd start with verifying that you have power and ground going to your module first.
When you first key on the throttle will do it's little test to reset where it needs to be for idle cranking, that's normal. When you have a working pedal, with key on, engine off, the throttle will move a full range of motion matching your pedal input. If it's quiet you can hear the throttle blade open and close. You can also watch it in real time with a scanner.
What setup do you have for your pedal?
I also had a fuel delivery issue as well when I was testing it on the stand a while back. I had fuel pressure but no injection. It would run on starting fluid. I ended up tracing it down to the injectors. A noid light confirmed I had injector pulse. I figured what are the chances all 8 injectors are plugged up or seized? Surely some must be firing enough for the thing to cough or sputter, but it would crank and crank and nothing. Sure enough I replaced the injectors and it fired on the first half crank.
How long have your injectors been sitting? Have they been dry or sitting with old fuel in the rail?