First of all, welcome to CK5.
Secondly, thank you for your service! You're not terribly far from me, I'm in Edmonton.
To the questions...going by the numbers the closest ratio I can figure you have in the 86 are 4.56. Well worth keeping. If you're going to keep the suspension you might as well keep the spring packs attached to the diffs...and you definitely want to keep the diffs if they have 4.56's.
The 6.2 has a sweet spot for cruise rpm and 1800 at 65 mph is it. You would have the ideal gears for the 6.2 to run the 35" boggers.
Parts I would keep are thing like the tailgate guts if they work OK in the 86. All the lights, lenses etc plus the harness's for them. I'd also remove and keep the entire under dash wiring harness plus fuse block. Steering box, fuel tank skid plate, tow hooks, F/R bumpers, complete doors if they're OK. Driveshafts too. All that should store in a fairly compact area and be easy enough to move when the time comes.