Guessing from your name its an 83. Does the fan come on? If you have no power at all to the controller, then its probably a loose wire or fuse you missed.
If the controller is powered up, but the fan does not run, it may be the resistor pack is unplugged, but it should run in high.
If its powered up, the fan runs, but no air comes out, then you have a jammed air door or a vacuum line off.
Bypassing the water to the heater core has no effect on air flow.