I can't view your pics, sorry. (work)
Just replace the fuse block if you've got the one that went to the harness. Don't try to make this easy on yourself, it will just make more work for you elsewhere. If you've got all the '89 wiring, match the wires up that are cut, and solder them back together. Install in truck. Done. There is no "easier" way to do it IMO, GM didn't put a bunch of junk in there, they put what is needed. Now if this is going to be a buggy or something where you want to mount stuff differently, I can see it, but not if you plan to run a semi-factory setup. If you can't simplify the injection wiring, why would you replace it? How is creating something from scratch any less difficult than swapping a complete harness? To create something from scratch, you would certainly need to understand how everything works and what it does before even trying. Then you need all new wiring, connectors, soldering, shrink tube everything, and so on.
Sounds like you found the ALDL?
Should have a "clear" connector off the ECM wiring near the ECM connectors, which goes to the drivers side of the truck for things like VSS input, 12V, etc.