The "most correct way" is to mount the door, set the rear door gap, then mount the fender and set the front gap.
But, as I discovered, and you are about to discover, you can do it, just takes longer to make the adjustments because access is limited. Either way, put the lower hinge back on the truck before you try to mount the door.

The bottom of the door was rubbing on the rocker a tad. So I took the fender off all the way and adjusted everything the "proper" way. Adjusted the door up a bit. Put on a new door striker and the door closes perfectly and fender gaps are " good enough".
Also does anyone know how the 1973-1975 battery tray secured the battery? I bought a new lower tray and clamp but it doesn't hold the battery down at all.
Also where did the rad overflow bolt to? Mine was screwed in with sheet metal screws to a random area prior to tear down
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Thanks for the overflow info, I got it back in.
That's the battery hold down I have. Flipped it both ways and it doesn't tighten down on the battery lip correctly. Could be that I have a group 78 battery instead of a group 75. Slightly wider and sits in the tray weird? Oh well. Figure it out later.
New inner fender came today, installed it and buttoned everything up. Passenger side is done. Minus a few missing bolts that ventured off to narnia in the garage.
Start the driver side tear down next week!
Granted i'm not a painter but i do know you are not going to get a perfect match. that is why they blend the paint over a large area to the difference isn't as noticeable.

Where did you get a full floor pan from?Got diagnosed with Covid, so I am stuck at home until after new years. Luckily no symptoms. So lots of free time again. I Cut and Fitted the front to rear floor brace. Also cleaned up and patched the rocker box where needed. The floor pan keeps getting cut more to access everything. So will probably replace it with the full replacement pan in the end.
Rust Bullet will arrive Friday, so I will paint the inside of the rocker box and underside of floor pan. Then some final trimming/fitting and zap it all back together!
Can't wait to Seal it up and hopefully ignore it for another decade.
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Where did you get a full floor pan from?