Air tubes are attached but the inlet from the pump is capped off at this time - exhaust SMELLS better but truck is running worse than ever currentlyIf the fuel pressure is low, it will have been adding fuel from the stock table. Disconnecting the battery will put it back. I think the lean condition code indicates that it can't trim any further. A misfire typically reads as rich.
You could try taking the A.I.R. tubes off the manifolds and plugging those holes as a test. IIRC, it's a weird pipe thread and not a standard bolt thread.