I've been staying out of this one, because by the time I saw it, most options had been mentioned already.
As mentioned, you cannot use a transformer on DC, and a capacitor would not help unless it was a really huge one used as a voltage doubler.
However, window motors for these trucks are easy to come by used. And the duty cycle is really short.
Just for fun, I would like to see what would happen with double voltage.
I would not try it on a vehicle I was using, but if you had a spare complete door or a truck that you were parting out, it would be interesting.
Of course, you would want to keep your fingers out of the way of the glass, it might go up awfully fast.
And might even break.
Remember that scene in the Bond film with the glass door??
If it worked, then it would be fairly easy to add a second battery that would charge in parallel with the regular battery but be in series for the windows.
Or, if that was too much, then a pair of 6 volt batteries would charge in series and go to the motor in parallel for 18 volts.
Just a thought.