Unfortunately, the word "tune" gets applied to a lot of things. There's configuration, like go to a manual transmission or turn the fans on sooner. There are "canned tunes", which alter a few settings (usually just more aggressive shifts and a little more timimg), which don't know anything about how your vehicle is running. Then there's real tuning, which is either done on the vehicle or remotely using datalogs from your vehicle. This is great because you learn from looking at the data.
You can't fix a mechanical problem by changing ECM settings. It should run fine on the stock file, except where there are incompatibilities. That just requires config and/or a segment swap.