All data or not, your Trans was working just fine, then you did an engine swap, and then it wouldn't shift. So you decided to re pin the trans connector? Sounds to me more like you missed a ground or mucked up a wire when you did the swap and as you said, cleaned up the wiring.
The plug on the trans side was broke, only reason i 're pinned it was because the new used harness I got was different. Using a scan tool the trans is getting 14 volts and is properly grounded.
