I know it may not mean much but I have welded a whole lotta trusses on axles. Never had an alignment bar and never needed to straighten one.
I know I have warped a couple just cause it had to be done ( in one case literally the guy said I wanna go on the run today, can we weld my truss on now, we were meeting in 20 minutes). That axle had been running around for several years now. No unusual seal leaks and when my buddy put it up on the alignment machine the rear wheels showed no unusual characteristics.
Take that for what you will. I don't think its possible to weld a housing without some major jigging and keep it perfectly straight. Will the slight misalignment you cause lead to problems, I seriously doubt it.
You have taken more steps than most to prevent issues. The chanced of having an issue that is caused because of the welding is minimal
I know I have warped a couple just cause it had to be done ( in one case literally the guy said I wanna go on the run today, can we weld my truss on now, we were meeting in 20 minutes). That axle had been running around for several years now. No unusual seal leaks and when my buddy put it up on the alignment machine the rear wheels showed no unusual characteristics.
Take that for what you will. I don't think its possible to weld a housing without some major jigging and keep it perfectly straight. Will the slight misalignment you cause lead to problems, I seriously doubt it.
You have taken more steps than most to prevent issues. The chanced of having an issue that is caused because of the welding is minimal



preheat the entire axle, weld it up using all practical methods keeping even the top of the truss about 200 degrees and let it cool slowly, even wrap it in a blanket or three. Last one I was part of was still over a hundred degrees 12 hours later(during winter time, shop is heated but still only 50 degrees or so overnight) 




