I had the egr vacuum line connected to an incorrect source of vacuum. Basically I went over each line and verified placement to the diagram on the radiator support. I realized I'm missing (I think) the decel valve and had a couple lines connected to the wrong ports in the system.
When I corrected this with it idling, I had to reset the timing and it smoothed out considerably.
Set it to 4° of timing, adjusted the mixture screws for as much vacuum as I could, put in clean plugs for cylinders 6 & 8, and she passed beautifully.